Home

Last updated: 2022-04-19

Checks: 2 0

Knit directory: Abatacept_scrnaseq_mi/

This reproducible R Markdown analysis was created with workflowr (version 1.7.0). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: up-to-date

Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Repository version: 6fc473c

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version 6fc473c. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:


Ignored files:
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/

Untracked files:
    Untracked:  code/utils.R
    Untracked:  code/utils_nichenet.R
    Untracked:  data/Table_1_Common Transcriptomic Effects of Abatacept and Other DMARDs on Rheumatoid Arthritis Synovial Tissue.xlsx
    Untracked:  omnipathr-log/

Unstaged changes:
    Deleted:    analysis/7_Conclusions.Rmd
    Deleted:    analysis/7_summary.Rmd

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/index.Rmd) and HTML (docs/index.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File	Version	Author	Date	Message
Rmd	6fc473c	Florian Wuennemann	2022-04-19	Main Update to code and adding NichenetR
html	a71b19c	Florian Wuennemann	2022-04-19	Build site.
html	8bae8ac	Florian Wuennemann	2022-04-14	Build site.
Rmd	270c68e	Florian Wuennemann	2022-04-14	wflow_publish("analysis/index.Rmd")
html	42466e6	Florian Wuennemann	2022-04-14	Build site.
Rmd	a0825d3	Florian Wuennemann	2022-04-14	wflow_publish("analysis/index.Rmd")
html	5724bdc	Florian Wuennemann	2022-04-14	Build site.
Rmd	6cfd0e3	Florian Wuennemann	2022-04-14	wflow_publish("analysis/index.Rmd")
html	90c0b04	Florian Wuennemann	2022-03-25	Build site.
Rmd	ba071aa	Florian Wuennemann	2022-03-25	wflow_publish("analysis/index.Rmd")
html	6e3bb2f	Florian Wuennemann	2022-03-25	Build site.
html	9b07a94	Florian Wuennemann	2022-03-25	Build site.
html	443e728	Florian Wuennemann	2022-03-24	Build site.
Rmd	f2e4dd4	Florian Wuennemann	2022-03-24	wflow_publish(c("analysis/about.Rmd", "analysis/index.Rmd", "analysis/license.Rmd"))
html	6534510	Florian Wuennemann	2022-03-24	Build site.
html	a69212d	Florian Wuennemann	2022-03-24	Build site.
Rmd	802d64a	Florian Wuennemann	2022-03-24	wflow_publish(c("analysis/about.Rmd", "analysis/index.Rmd", "analysis/license.Rmd",
html	46f2db7	Florian Wuennemann	2022-03-23	First commit.
Rmd	1ca2892	Florian Wuennemann	2022-03-18	Start workflowr project.

This page contains all of the analysis performed by Florian Wuennemann on the scRNA-seq dataset for the Abatacept treated myocardial infarction model.